RetrogeneDB ID: | retro_etel_1765 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_292570:157922..158179(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPF | ||
Ensembl ID: | ENSETEG00000001558 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide F [Source:HGNC Symbol;Acc:11162] |
Percent Identity: | 76.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSLPLNPKPFLNG-LTGKPVMVKLKWGMEYK-GYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN |
MSLPLNPKP.LN..LTGKPV.VK.K..MEY..GYLVSVDG...MQLANT.EYI.G.LSG.L.EVLIRC.N | |
Retrocopy | MSLPLNPKPSLND<LTGKPVVVKVKRDMEYR<GYLVSVDGPVSMQLANTDEYIHGTLSGYLDEVLIRCHN |
Parental | -VLYIRGVEEEEEDGEMRE |
.VLYIRG.E.EEEDGEMRE | |
Retrocopy | >VLYIRGDEVEEEDGEMRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002166 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000006395 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000002705 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001558 | 3 retrocopies |
retro_etel_1765 , retro_etel_1846, retro_etel_560,
|
Felis catus | ENSFCAG00000029966 | 4 retrocopies |