RetrogeneDB ID: | retro_etel_1772 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_293877:11370..11869(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSETEG00000004125 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 64.33 % |
Parental protein coverage: | 51.39 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | EAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRR |
.AANVT..GGVPV..SKYAAD.NHY..YP.RR.PP..YQQN.QNS.SGEK.E.SESAP.GQAQQ.R..RR | |
Retrocopy | KAANVTSLGGVPVHDSKYAADCNHYTCYPHRRSPPLIYQQNHQNSNSGEKKERSESAPGGQAQQHRSNRR |
Parental | RRFPPYYM-RRPYGRRPQYSN-PPVQGEVMEGADNQGAGEQ-GRPVRQNMYR-GYRPRFRRGPPRQRQPR |
..FP..YM.RRP.G...Q.S..PP.Q.EVMEGADNQG.GEQ..RPVRQ.MYR.G.R..F.R.PP.Q...R | |
Retrocopy | *QFPAHYM>RRPCGHQLQHSYLPPLQEEVMEGADNQGEGEQ<SRPVRQYMYR<GFRI*FCRSPPHQHHGR |
Parental | EDGNEEDKENQDETQGQQPPQRRY-RRNFNY |
ED..EED.ENQ.ETQG..P.Q..Y...NF.Y | |
Retrocopy | EDSHEEDNENQGETQGHKPSQCWY<LHNFDY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |