RetrogeneDB ID: | retro_etel_1800 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_298581:9274..9603(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS24 | ||
Ensembl ID: | ENSETEG00000007481 | ||
Aliases: | None | ||
Description: | ribosomal protein S24 [Source:HGNC Symbol;Acc:10411] |
Percent Identity: | 70.27 % |
Parental protein coverage: | 81.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MNDTV-TIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMY-KTTPDVIFVFGFRTHFGGGK |
.NDTV.TI.TRK.M.NR.LQRKQMV..VLHPG.ATVPK...RE.LAK.Y.KTTP.VIFV.GFR..FGGGK | |
Retrocopy | INDTVVTIQTRKSMSNRRLQRKQMVTAVLHPGEATVPKRDVREALAKRYEKTTPGVIFVSGFRAQFGGGK |
Parental | TTGFGMIYDSL-DYKKNEPKHRLARHGLYEKK-KTSRKQRK |
T.GFG.I..SL.D.KKNEPKHRLA..GL.E.K.K.SRKQ.. | |
Retrocopy | TPGFGTIDESLDDAKKNEPKHRLAGRGL*ESK<KASRKQAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000010243 | 18 retrocopies | |
Echinops telfairi | ENSETEG00000007481 | 32 retrocopies |
retro_etel_1119, retro_etel_1242, retro_etel_1274, retro_etel_1339, retro_etel_1395, retro_etel_1663, retro_etel_1688, retro_etel_1783, retro_etel_1800 , retro_etel_1806, retro_etel_183, retro_etel_1901, retro_etel_1934, retro_etel_1978, retro_etel_1991, retro_etel_2040, retro_etel_2104, retro_etel_223, retro_etel_287, retro_etel_289, retro_etel_369, retro_etel_422, retro_etel_476, retro_etel_503, retro_etel_523, retro_etel_67, retro_etel_744, retro_etel_752, retro_etel_815, retro_etel_904, retro_etel_91, retro_etel_94,
|
Gadus morhua | ENSGMOG00000012595 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000025091 | 3 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000006329 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000008090 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000010328 | 8 retrocopies |