RetrogeneDB ID: | retro_etel_1816 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_301670:2715..3938(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000007539 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBA4A | ||
Ensembl ID: | ENSETEG00000010296 | ||
Aliases: | None | ||
Description: | tubulin, alpha 4a [Source:HGNC Symbol;Acc:12407] |
Percent Identity: | 82.57 % |
Parental protein coverage: | 91.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDL |
M...ISVHVGQAGVQ.GNA.WELYCLEHGIQPDGQ...DK..GGGDDSF.TFF.ETGAGKH.P..VFVDL | |
Retrocopy | MYKHISVHVGQAGVQIGNAGWELYCLEHGIQPDGQKSCDKASGGGDDSFKTFFSETGAGKHMPQVVFVDL |
Parental | EPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHS |
EP.VIDE.R...YRQLFHPEQLITGKEDA.NNYARGHYT.GKE.ID.VLDRIRKLSDQCTGLQ.FL.FHS | |
Retrocopy | EPMVIDEVRTDTYRQLFHPEQLITGKEDATNNYARGHYTTGKELIDLVLDRIRKLSDQCTGLQDFLIFHS |
Parental | FGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTNHTTLEHSDCAFMVDNEAIY |
FGGGT..GFTSL.MERLSVDY.KKS.L.FSIYPAP..STAVVE.YNSILT.H.TLEHSDC.FMVDNE.IY | |
Retrocopy | FGGGT--GFTSLQMERLSVDYSKKSNLDFSIYPAPHISTAVVESYNSILTTHATLEHSDCTFMVDNETIY |
Parental | -DIGRSNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHF-PLATYAPVISA |
.DI...NLDIE..TYT.LN.LI.QIV.SITASL.FDGALNVDLTEFQTNLV.YPRIHF.PLATYAPVISA | |
Retrocopy | >DICHRNLDIECLTYTHLNCLIGQIVYSITASLCFDGALNVDLTEFQTNLVSYPRIHF<PLATYAPVISA |
Parental | EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCP |
EKAYHEQLSVA.ITN.CFEPANQM.KCDP.HGKYMACCLLYRG..VPKD.NAAIA.IKTKR.IQFVDWCP | |
Retrocopy | EKAYHEQLSVAKITNVCFEPANQMMKCDPHHGKYMACCLLYRGAMVPKDANAAIATIKTKRTIQFVDWCP |
Parental | TGFKVGINYQPPTVVPG-GDLAKVQRAVCMLSNTTAIAEAWERLDHKFDLMYAKRPFVHWYVG |
.GFKVGINYQPPTVV.G.GDLAKVQ...CMLSN.T.IAEAW.RLDHKFDLMYAKR.F.HWYVG | |
Retrocopy | MGFKVGINYQPPTVVSG<GDLAKVQCVMCMLSNMTSIAEAWARLDHKFDLMYAKRGFMHWYVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000000154 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000010296 | 2 retrocopies |
retro_etel_1816 , retro_etel_1993,
|
Felis catus | ENSFCAG00000027277 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000010779 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000000804 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010798 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003597 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019497 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010042 | 1 retrocopy |