RetrogeneDB ID: | retro_etel_1835 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_305163:19811..20208(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000008318 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.42 % |
Parental protein coverage: | 53.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | DGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTLDASLPLRLRPESMEK |
.GAG.E..PMD.WLLL.SYI.PEDIV...LIC.N..T.T.TAAF.TRL....Y....SLPL..RPESMEK | |
Retrocopy | NGAGVEADPMDTWLLLVSYIHPEDIVKGLLICQNSGTGTSTAAFQTRL-DQNYMMNVSLPLQMRPESMEK |
Parental | LRCLRACVIRSLYHMYEPFASRISKNP-AIPESTP-NTLKNSKCLLFWCRKVVGNRQEPMWEFNFKFK |
L.C..ACVI.SLY....PFA......P..IPESTP..TLK.SKCL.F...K.VG.RQE..WEF.F..K | |
Retrocopy | LCCPQACVIWSLYYADKPFA--VPRTP<TIPESTP<STLKSSKCLVFRYMKLVGTRQESTWEFIFMLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000008318 | 1 retrocopy |
retro_etel_1835 ,
|
Felis catus | ENSFCAG00000013106 | 1 retrocopy | |
Homo sapiens | ENSG00000163444 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000009834 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018443 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000801 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018106 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000000911 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000340 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001864 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000003594 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000015473 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012466 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007009 | 1 retrocopy |