RetrogeneDB ID: | retro_etel_1838 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_305605:7046..7634(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSETEG00000007922 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 91.84 % |
Parental protein coverage: | 98.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GTAKIGHPAPNFKATAVMPDGQFKDISLTDYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQV |
GTAKIGHPA.NFKATAVMPDGQFKDISLTDYKGK.I...FY.LDFTFVCPTEIIA.SDRAEEFKKLNCQV | |
Retrocopy | GTAKIGHPASNFKATAVMPDGQFKDISLTDYKGKCISVSFYSLDFTFVCPTEIIALSDRAEEFKKLNCQV |
Parental | IGASVDSHFCHLAWINTPKKEGGLGPMNIPLVSDSKRTIAQDYGVLKVDEGISFRGLFIIDDKGILRQIT |
IGASVDSHFCHLAW.NT.KKEGGLGPMNIPLVSD.KRT.AQDYGVLKVDEGISFRG.FIIDDKGILRQIT | |
Retrocopy | IGASVDSHFCHLAWTNTSKKEGGLGPMNIPLVSDPKRTVAQDYGVLKVDEGISFRGFFIIDDKGILRQIT |
Parental | VNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSREYFAKQK |
VNDLPVG.SVDETLRLVQAF.F.DKHGEVCPAGWKPGSDTIKPDVQKSREYFAK.K | |
Retrocopy | VNDLPVGCSVDETLRLVQAFHFRDKHGEVCPAGWKPGSDTIKPDVQKSREYFAKRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |