RetrogeneDB ID: | retro_etel_1858 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_308487:55270..55578(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | THOC7 | ||
Ensembl ID: | ENSETEG00000015076 | ||
Aliases: | None | ||
Description: | THO complex 7 homolog (Drosophila) [Source:HGNC Symbol;Acc:29874] |
Percent Identity: | 64.42 % |
Parental protein coverage: | 52.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGK-TLLVYDMNLREMENYEK |
L.D.DG.GDD....LLVK.F.K.CN..SQEE..S.YQRM.STL.Q..FS.GK.TLL.YDMNLREMENYEK | |
Retrocopy | LLDRDGTGDDQSVHLLVKIFTK*CNARSQEEQCSLYQRMRSTLAQSDFSLGK<TLLAYDMNLREMENYEK |
Parental | IYKEIECSIAGAHEKVAECKKQILQAKRIRKNRQ |
IY.EI.C.I.GA..K.A..KK.ILQ.K.I..N.Q | |
Retrocopy | IYREIKCNISGAIGKIARRKKKILQLKQI*DNLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000034899 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015076 | 3 retrocopies |
retro_etel_1093, retro_etel_1858 , retro_etel_85,
|
Macropus eugenii | ENSMEUG00000006342 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000012060 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003009 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000021860 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013894 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011615 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007069 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013618 | 3 retrocopies |