RetrogeneDB ID: | retro_etel_187 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_3241:70668..71023(+) | ||
Located in intron of: | ENSETEG00000006769 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AAMDC | ||
Ensembl ID: | ENSETEG00000006423 | ||
Aliases: | None | ||
Description: | adipogenesis associated, Mth938 domain containing [Source:HGNC Symbol;Acc:30205] |
Percent Identity: | 61.98 % |
Parental protein coverage: | 97.54 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | PEIASLSWGQMKVQGSTKTYKDCKVWPGGSRAWDWRETGTEHSPGVQPADVE-EVAKKGVQTLVIGRG-M |
P...SLSWGQMK..GSTKTYKD.K.WPGG..AW..R.T.TEHSPGVQPADVE...A......L....G.. | |
Retrocopy | PSLPSLSWGQMKAHGSTKTYKDGKGWPGGCWAWG*RGTRTEHSPGVQPADVE>KLARTKYRPLCLAEG*V |
Parental | SEALKVPPSTVEYLEKQGIHVRALQTEQAVKEYNALAAQGVRVGGVFHSTC |
......PP..V.YL.K.GI.V.ALQ.E.AVKEY.ALAAQGVRVG..FHSTC | |
Retrocopy | RP*RSLPP--VDYLDKPGIKVWALQMEMAVKEYSALAAQGVRVGSMFHSTC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002128 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014890 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006423 | 1 retrocopy |
retro_etel_187 ,
|
Felis catus | ENSFCAG00000007450 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000000518 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000300 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000015932 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012584 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002262 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007111 | 1 retrocopy |