RetrogeneDB ID: | retro_etel_1872 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_309982:103573..103924(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SET | ||
Ensembl ID: | ENSETEG00000016746 | ||
Aliases: | None | ||
Description: | SET nuclear oncogene [Source:HGNC Symbol;Acc:10760] |
Percent Identity: | 70. % |
Parental protein coverage: | 52.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NEQASEEI-LKVEQKYNKLRQP-FFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVT |
...A.EEI.LKVE..YN.L.QP..F.KRS.L.A.IP...V.TFVN.PQ.SA.L.EEDEEALHYLTR.EVT | |
Retrocopy | HKPACEEI<LKVEDTYNELHQP>YF-KRSALMATIPKCGVRTFVNNPQASAMLTEEDEEALHYLTRIEVT |
Parental | EFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSG |
E.EDIK.G..I.FYF...PYFENKVLSKEFH..E.GDP.SKSTEIKWKSG | |
Retrocopy | ESEDIKFGDIIYFYFNKKPYFENKVLSKEFHPTEHGDPTSKSTEIKWKSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015686 | 7 retrocopies | |
Bos taurus | ENSBTAG00000020959 | 8 retrocopies | |
Canis familiaris | ENSCAFG00000032728 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000016746 | 15 retrocopies | |
Felis catus | ENSFCAG00000005848 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014291 | 13 retrocopies | |
Mustela putorius furo | ENSMPUG00000013069 | 10 retrocopies | |
Mus musculus | ENSMUSG00000054766 | 17 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017595 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007501 | 12 retrocopies | |
Otolemur garnettii | ENSOGAG00000007635 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019659 | 17 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000010546 | 6 retrocopies |