RetrogeneDB ID: | retro_etel_1898 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_312402:43773..44228(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX3 | ||
Ensembl ID: | ENSETEG00000002557 | ||
Aliases: | None | ||
Description: | Y box binding protein 3 [Source:HGNC Symbol;Acc:2428] |
Percent Identity: | 59.12 % |
Parental protein coverage: | 55.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QFFGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRTRVFPHPNRMQAGEIGEMKDGVPEGAQLQGPVHRN |
QFFGA..Q...PQY.PQYRQRRF.PY.VGQTFDRRTRVFPHPNR.QA...GE...G..E.....GPVH.N | |
Retrocopy | QFFGAWSQPCHPQYHPQYRQRRFLPYQVGQTFDRRTRVFPHPNRIQA---GEI--GEMEDGVPEGPVHQN |
Parental | PTYRPRYRSRGPPRPQALAAGKAQRNNENQQSAHGPNPPFARQ-VYPPADTYRRPLPRPNXXXXXXXXAK |
PTYRPRY..R.PPRP.A..A......NE.QQ...GPN.P.AR......A..YRR....PN.........K | |
Retrocopy | PTYRPRYHRR-PPRPRAPPAAGEAEDNETQQAVNGPNQPSARR<WFLAAYNYRRRPHPPNAPSQDGKEVK |
Parental | TGEVPTENPAPATEQSSAE |
.G.VPTENPAP.TEQSSAE | |
Retrocopy | AGQVPTENPAPVTEQSSAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000002557 | 1 retrocopy |
retro_etel_1898 ,
|
Echinops telfairi | ENSETEG00000004125 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000004602 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002108 | 1 retrocopy |