RetrogeneDB ID: | retro_etel_1916 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_313940:40855..41663(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSETEG00000007508 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 93.75 % |
Parental protein coverage: | 80.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MATLKEQLIQNLLKEEQAP--QNKITVVG-VGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQH |
MATLKEQLIQNLLKEEQAP.........G.V.AVGMACAI.ILMKDLADELALVDVMEDKLKGEMMDLQH | |
Retrocopy | MATLKEQLIQNLLKEEQAPSPRTRLQLLG<VSAVGMACAIRILMKDLADELALVDVMEDKLKGEMMDLQH |
Parental | GSLFLRTPKIVSGKDYDVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVS |
G.LFLRTPKIVSGKDYDVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVS | |
Retrocopy | GNLFLRTPKIVSGKDYDVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVS |
Parental | NPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVA |
NPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVA | |
Retrocopy | NPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVA |
Parental | GVSLKNLHPALGTDGDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVAD-LAESIMKNLR |
GVSLKNLHPALGTDGDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGL..AD.LAESIMKNL. | |
Retrocopy | GVSLKNLHPALGTDGDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLVCAD<LAESIMKNLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |