RetrogeneDB ID: | retro_etel_1922 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_314414:82648..82912(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000014969 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.36 % |
Parental protein coverage: | 59.86 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | GGDGQAGPDEGENMAAALQAALKNPP---INTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKSGVD |
G.DGQA.P.EG........AAL...P...INTK..AVKD..GSIV.K.L.SFKANDIEKA..SLD..GVD | |
Retrocopy | GDDGQARPNEGKVDSCL*RAALSTCPVTLINTKR*AVKDQVGSIVWKELVSFKANDIEKAAPSLDQNGVD |
Parental | LLMKYIYKGFESPFGSSS |
LLM..I.KGF.SP.G.SS | |
Retrocopy | LLMTEISKGFGSPSGNSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000560 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010375 | 3 retrocopies | |
Equus caballus | ENSECAG00000019128 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000014969 | 1 retrocopy |
retro_etel_1922 ,
|
Monodelphis domestica | ENSMODG00000007194 | 1 retrocopy | |
Mus musculus | ENSMUSG00000008475 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000028062 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006295 | 8 retrocopies |