RetrogeneDB ID: | retro_etel_1926 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_314886:10552..11015(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NXT2 | ||
Ensembl ID: | ENSETEG00000008002 | ||
Aliases: | None | ||
Description: | nuclear transport factor 2-like export factor 2 [Source:HGNC Symbol;Acc:18151] |
Percent Identity: | 67.52 % |
Parental protein coverage: | 77.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VVTQPLPEH-ALGTPGTMSVDFKTYVDQACRAAEEFVHIYYETMDKRRRVLPRLYLDTATLLWNGNVVTG |
VVT.PLPEH.AL..PGTM.VDF..YVDQAC.AAEEFV.IYYETMDKRR.V.P.LYLD.ATLLWNGNVV.G | |
Retrocopy | VVT*PLPEHTALDYPGTMPVDFPSYVDQACGAAEEFVNIYYETMDKRRQVRPTLYLDMATLLWNGNVVIG |
Parental | MDGITNFF--EMLPSSEFQI-NMLDCQPVHEQATPSQSTVLVVTSGTVKFDGSHPHYYNQNFLLTAQSTP |
MD..T.FF.....P...F....M.D.QPVHEQA.PSQST.LVVT.GT...DGS....Y..NFLL.AQ.TP | |
Retrocopy | MDAVTDFFPPKCSPPVSFKL<KMPDRQPVHEQAAPSQSTALVVTGGTAQCDGSQQQDYSKNFLLRAQTTP |
Parental | NQTVWKIA-SDCFRFQD |
.QTV.K...S.CFRFQD | |
Retrocopy | HQTVGKTT<SECFRFQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |