RetrogeneDB ID: | retro_etel_1946 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_318654:37825..38841(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SDAD1 | ||
Ensembl ID: | ENSETEG00000004811 | ||
Aliases: | None | ||
Description: | SDA1 domain containing 1 [Source:HGNC Symbol;Acc:25537] |
Percent Identity: | 59.09 % |
Parental protein coverage: | 55.38 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | ILLRNKNLINPSSLLELFFELLRCHDKLLR-KTLYTHIVTDIKNINAKHKNNKVNVVLQNFMYTMLRDSS |
.LLRNKNLIN.SS.LELF.ELL....KLL..K.LYTHIVT..K..N.K..............YTMLR.S. | |
Retrocopy | LLLRNKNLINSSSFLELFVELLCFYEKLLK<KNLYTHIVTEGK--NTKQTQEQ*STCSAAKFYTMLRHSN |
Parental | ATAAKISLDVMIELYRRNIWNDAKTVNVITTACFSPVTKILVAALTFFLKDEQEKQDSDSDSEE-GPTAR |
.T..KIS...MIEL...NIWN.A.TV.V.TT.CFS.VT..LV.A..FF....QEKQ.....S...G.T.R | |
Retrocopy | KTTSKISWNGMIELHKENIWNYAQTVHVTTTLCFSKVTNLLVTASAFF---KQEKQRNYLNSKT*GSTSR |
Parental | DL-VQYATGKKSSKHKKK-LEKAMKVLKKQKKKKKPEVFNFSAIHLIHDPQDFAEKLLKQLE-SSKERFE |
.L.VQYATGK.SSK.K.K.LEKAMKV.K.QKKK....V..FSAI....DPQDF.EK.LK....SSKE.FE | |
Retrocopy | NLLVQYATGKESSKAKVK>LEKAMKVPKIQKKK*RG-VLDFSAILSLPDPQDFSEKQLKTYR<SSKENFE |
Parental | VKMMLMNLISRLVGIHELFLFNFY-PFVQRFLQPHQREVTKILLFAAQASHHLVPPEIIQSLLMTVANNF |
VKMML..LISR..GI..LF.FNF..P.......P....V..ILLF.A.A.HHLV.PE...SLLMTVANNF | |
Retrocopy | VKMMLRTLISRFLGILVLFFFNFH>PLFKTSFSP--TKVPNILLFTAHAFHHLVTPEFMPSLLMTVANNF |
Parental | VTDKNSGEVMTVGINAIKEITARCPLAMTEELLQDLAQYKTHKDKNVM-MSARTLIQLFRTLNPQMLHKK |
VT..NS.EV.T.GI.A..EITAR.PL.MTE.LLQDLAQ.KTHKDK.V..MSA.TLIQLFR....QML... | |
Retrocopy | VTG*NSSEVKTLGIKAMEEITARWPLPMTEGLLQDLAQEKTHKDKKVQ<MSAGTLIQLFRPRSLQMLYTE |
Parental | FR |
F. | |
Retrocopy | FQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000008521 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000004811 | 2 retrocopies |
retro_etel_1946 , retro_etel_779,
|
Gorilla gorilla | ENSGGOG00000006441 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012217 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006682 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017503 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027034 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000022229 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000008974 | 1 retrocopy |