RetrogeneDB ID: | retro_etel_1953 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_319450:9752..10218(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POLR2C | ||
Ensembl ID: | ENSETEG00000004185 | ||
Aliases: | None | ||
Description: | polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Source:HGNC Symbol;Acc:9189] |
Percent Identity: | 67.28 % |
Parental protein coverage: | 56.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | DLISNSSRVIPVTSRN--RDSDPNEYVEQDDILIVKLRKG-QELRLRAYAKKGFGKEHAKWNPTAGVAFE |
D...N..R...VT.......SDP..YV.QDDILI.KLRKG.QELRL.A.AK.GFGKE..KWNPTAGV..E | |
Retrocopy | DVQCNEDRTCHVTTHDLISNSDPRGYVGQDDILIIKLRKG<QELRL*ACAKEGFGKECTKWNPTAGVVVE |
Parental | YDPDNALRHTVYPKPEEWPKSEYSELDEDESQA-PYDPNGKPERFYYNVESCGSLRPETIVLSALSELKK |
YDPDN..RHTVYPKPEEWPK.EY....EDESQ..PY.PNG..ERFY...ESCGSL.PETIVLSALS.L.. | |
Retrocopy | YDPDNVRRHTVYPKPEEWPKGEYQSW-EDESQG>PYNPNGTSERFYCSMESCGSLHPETIVLSALS-LRR |
Parental | -KLSDLQTQLS-CEIQSDVLTI |
.KL.DL.TQLS.C.IQ.D.LTI | |
Retrocopy | <KLNDLKTQLS<CKIQCDALTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000008720 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000002986 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012016 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000000081 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004185 | 1 retrocopy |
retro_etel_1953 ,
|
Homo sapiens | ENSG00000102978 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012415 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015833 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000020474 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031783 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003034 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016866 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000006979 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007390 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008157 | 1 retrocopy |