RetrogeneDB ID: | retro_etel_1957 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_319735:3818..4097(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIGD1A | ||
Ensembl ID: | ENSETEG00000007493 | ||
Aliases: | None | ||
Description: | HIG1 hypoxia inducible domain family, member 1A [Source:HGNC Symbol;Acc:29527] |
Percent Identity: | 91.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSSNTDISLSSYDEDQGSKLIRKAKEAPFVPIGIAGCAAIVA-YGLYKLKSRGNTKMSVHLIHMRVAAQG |
.SSNTDISLSSYDEDQGSKLIRKAKE.PFVPIGIAGCAAIVA.YGLYKLKSRG.TKMSVHLIHMRVAAQG | |
Retrocopy | ISSNTDISLSSYDEDQGSKLIRKAKESPFVPIGIAGCAAIVA<YGLYKLKSRGDTKMSVHLIHMRVAAQG |
Parental | FVVGAMTVGMVYSMYRESW-AKPKQ |
FVVGAMTVGMVYSM.RE.W..KPKQ | |
Retrocopy | FVVGAMTVGMVYSMFREYW>TKPKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |