RetrogeneDB ID: | retro_etel_1983 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_321668:279210..279644(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSR1 | ||
Ensembl ID: | ENSETEG00000020111 | ||
Aliases: | None | ||
Description: | signal sequence receptor, alpha [Source:HGNC Symbol;Acc:11323] |
Percent Identity: | 70.67 % |
Parental protein coverage: | 52.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MRLLPRLLLLLLLTFPATLLFRGGSGGSLALAQDLTEDE-ETVEDSIIEDEDDEAEVEEDEPTDLAEDKE |
MR.LP.LLLL.LLTFPATL.F..G.G...ALAQDL.....ET.EDSI.EDEDDE.EV.E.EPT.LA.DK. | |
Retrocopy | MRPLPHLLLLILLTFPATLVFKRGPG---ALAQDLRDNK<ETMEDSISEDEDDEPEVKEGEPTNLADDKD |
Parental | EEDLSGEPEASPSADTTILFVKGEDFPANNIVKFLVGFTNKGTEDFVVESLDASFRYPQDYQFYIQNFTA |
..DLSGEPE..P.ADTTIL.VKGEDFPANN..KFLVGFTN...EDFV.ESLDASF.YP.DYQ.YIQNFTA | |
Retrocopy | V-DLSGEPESLPCADTTILSVKGEDFPANNTMKFLVGFTNQASEDFVIESLDASFHYPHDYQVYIQNFTA |
Parental | LPLNTVVPPQ |
.PLN...P.. | |
Retrocopy | IPLNSFIPAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000022731 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015772 | 1 retrocopy | |
Equus caballus | ENSECAG00000019520 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020111 | 1 retrocopy |
retro_etel_1983 ,
|
Oryctolagus cuniculus | ENSOCUG00000009083 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014234 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022608 | 1 retrocopy |