RetrogeneDB ID: | retro_etel_203 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_353:358932..359572(-) | ||
Located in intron of: | ENSETEG00000013613 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB2A | ||
Ensembl ID: | ENSETEG00000010340 | ||
Aliases: | None | ||
Description: | RAB2A, member RAS oncogene family [Source:HGNC Symbol;Acc:9763] |
Percent Identity: | 88.02 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMI-TIDGKQIK-LQIWDTAGQES |
MAYAYLF.YIIIGDTGVGKSCLLLQFTDKRFQPVHDL.TIGVEFGARMI.TID.KQIK.LQIWD...... | |
Retrocopy | MAYAYLF*YIIIGDTGVGKSCLLLQFTDKRFQPVHDL>TIGVEFGARMI>TIDRKQIK>LQIWDMGRTRV |
Parental | -FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEA |
.F.S..RSYYR.AAGAL.VYDITRRDTFNHLTTWLEDA.QHSNSNMVIMLIGNKSDLESRREVKKEEGEA | |
Retrocopy | LFASSQRSYYREAAGALQVYDITRRDTFNHLTTWLEDACQHSNSNMVIMLIGNKSDLESRREVKKEEGEA |
Parental | FAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNATHAGSQGGQ- |
FAR.HGLIFMETSAKTASNVEEAFINTAK..YEKIQ.GVFDINNEANGIKIGPQHAATNATHAGSQGG.. | |
Retrocopy | FARGHGLIFMETSAKTASNVEEAFINTAK*NYEKIQ-GVFDINNEANGIKIGPQHAATNATHAGSQGGL> |
Parental | QAGDGCC |
QA..GCC | |
Retrocopy | QAEGGCC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000007700 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004920 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000010340 | 2 retrocopies |
retro_etel_203 , retro_etel_32,
|
Echinops telfairi | ENSETEG00000018042 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000008556 | 2 retrocopies | |
Mus musculus | ENSMUSG00000047187 | 1 retrocopy |