RetrogeneDB ID: | retro_etel_2046 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_40650:657..998(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000004856 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000012052 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.43 % |
Parental protein coverage: | 98.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPMFVVNTNVPRASVPDGLLSELTQQLAQATGKPAQYIAVHVVPDQLMVFGGSGEPCALCS-LHSIGKIG |
MP.FVVNTNVPRASVPDGL.SELTQQLAQATGKPAQYIAVHVV.DQLMVFGGSGEPCALC..LHSIGKIG | |
Retrocopy | MPLFVVNTNVPRASVPDGLFSELTQQLAQATGKPAQYIAVHVVLDQLMVFGGSGEPCALCT<LHSIGKIG |
Parental | GAQNRTYSKLLCGLLAERLRISSERIYINYYDMNASNVGWNGFPF |
.AQNRTYSKLLCGLLAERLRIS.ERIYIN.YDMNA.NVGWNG..F | |
Retrocopy | EAQNRTYSKLLCGLLAERLRISPERIYINDYDMNAANVGWNGSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000010668 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000013520 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014555 | 1 retrocopy | |
Equus caballus | ENSECAG00000012792 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012052 | 3 retrocopies |
retro_etel_2001, retro_etel_2046 , retro_etel_509,
|
Mus musculus | ENSMUSG00000033307 | 8 retrocopies | |
Ochotona princeps | ENSOPRG00000012184 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006589 | 6 retrocopies |