RetrogeneDB ID: | retro_etel_2071 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_47168:1224..1455(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FKBP1B | ||
Ensembl ID: | ENSETEG00000018990 | ||
Aliases: | None | ||
Description: | FK506 binding protein 1B, 12.6 kDa [Source:HGNC Symbol;Acc:3712] |
Percent Identity: | 88.31 % |
Parental protein coverage: | 81.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RTFPKKGQTCVVHYTGILQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAY |
..FPKKGQTCV.HYTG.LQNGKKF.SSRDRNKPFKFRIGKQEVIKGF..GAAQMSLGQR.KLTCTPDV.Y | |
Retrocopy | KAFPKKGQTCVLHYTGMLQNGKKFNSSRDRNKPFKFRIGKQEVIKGFDKGAAQMSLGQRVKLTCTPDVVY |
Parental | GTTGHPG |
GTTGHPG | |
Retrocopy | GTTGHPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002797 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000006859 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013920 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000003358 | 8 retrocopies | |
Echinops telfairi | ENSETEG00000007454 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018432 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018990 | 2 retrocopies |
retro_etel_186, retro_etel_2071 ,
|
Homo sapiens | ENSG00000119782 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010689 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001530 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011708 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013808 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012282 | 1 retrocopy |