RetrogeneDB ID: | retro_etel_2074 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_48157:1332..1536(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SS18L2 | ||
Ensembl ID: | ENSETEG00000007192 | ||
Aliases: | None | ||
Description: | synovial sarcoma translocation gene on chromosome 18-like 2 [Source:HGNC Symbol;Acc:15593] |
Percent Identity: | 65.22 % |
Parental protein coverage: | 89.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VAFVPNWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRANECVQYQHVLHRNLIYLATIADASPSS |
VA...N.L.G.......TI..LLEEN.QLIRCI.EYQNKG.AN.CV.YQHV.HRNLIYLAT.A.A.P.S | |
Retrocopy | VALIWN*LLGHVQTTLKTIEWLLEENGQLIRCIIEYQNKGQANKCVLYQHV-HRNLIYLATSAYACPTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000000989 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000015005 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014065 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007192 | 2 retrocopies |
retro_etel_1749, retro_etel_2074 ,
|
Loxodonta africana | ENSLAFG00000021542 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000013024 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032526 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000015198 | 4 retrocopies | |
Sorex araneus | ENSSARG00000014056 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007658 | 1 retrocopy |