RetrogeneDB ID: | retro_etel_2075 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_48705:1426..2228(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000011385 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000019748 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.23 % |
Parental protein coverage: | 70.71 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MAGPFSRLLSARPGLKFVALAGAGSLAAGF-LLRPEPVRAAVERRRLYPPSAEYPDLRKHNNCMASHLTP |
MA.PFS.LLS..PGLKF.ALA.AGSLA..F.LL.PEP..AA.E..RLYPPSAEYP.L.KHNN..A.HLT. | |
Retrocopy | MAVPFSHLLSTCPGLKFTALARAGSLATSF<LLCPEPSGAASE*QRLYPPSAEYPNLQKHNNGIACHLTL |
Parental | AVYARLCDKTTPTGWTLDQCIQTGVDNPGHPFIKTVGMVAGDEETYEIFAELFDPVIEERHNGYNPR-TM |
AVYA.LCDKTTP.GW.LD.C.QTGVDNPGHPFIKTV...AGDEETYEIFAELFDPVI.E...G..P..TM | |
Retrocopy | AVYAWLCDKTTPPGWMLDHCNQTGVDNPGHPFIKTVDTEAGDEETYEIFAELFDPVIQE*QDGSDPL>TM |
Parental | KHPTDLDATKIRSGNFDERYVLSSRVRTGRSIRGLSLPPACTRAERREVERVVVDALSGLKGDLTGRYYR |
KHP.DLDA.KIRSG.FDERYVLSSRVRTGRSIRGLSLPPACT.AE..EVE.VVVD.LSGLKGDLTG..Y. | |
Retrocopy | KHPSDLDASKIRSGYFDERYVLSSRVRTGRSIRGLSLPPACTQAEQ*EVEHVVVDVLSGLKGDLTGHDYQ |
Parental | LSEMTEAEQQQLIDDHFLFDK-PVSPLLTAAGMARDWPDARGIWHNNEKSFLIWVNEEDHT |
LSE.TEAEQQQL.DDH.L.DK.PV..L.TA.GMARDWPDARG..HNNEKSFLIWVNEEDHT | |
Retrocopy | LSEVTEAEQQQLTDDHLLLDK>PVPLLNTA-GMARDWPDARGLGHNNEKSFLIWVNEEDHT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000008667 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019748 | 2 retrocopies |
retro_etel_1343, retro_etel_2075 ,
|
Macaca mulatta | ENSMMUG00000007870 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012104 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005837 | 1 retrocopy |