>retro_etel_2077
TTTTCACCTCTCAACCCCTTTGCCTGGGCAGATCATTTGAAAGCCCACGAAGAGGCTCAGGTCTCATACAGCACTGCAGG
GCAACAGAAGTTACCTTACCTCAGAGGCTGCAGGATCCCAGGCTTGCCGCTGGGCTCCGGTGGGCCTTCCAGCAGAGTCT
TGTCTATTGGCTCCACCCTTCTTTGCCCTGGCTGCCACTGTTCCCTCGAATCGGAACAGACAGAAGAATGGCCGGAAAGA
CAAGCCCACGGTCAAATGATGATGCCCTGCAACACGTTTTAATGAGTGACTGGTCAGTAAGCTTTACTTCTCTATATAGT
CTGCTGAAAACAAAGCTTTGCCCCTATTTCTACATTCGTCCCTATCAGTTTACAGTACTGTTCCGGGCAGCAGGGTTTCC
TGGAAGTGCTGTCATCACGGTTCTCATCTCCCCCACAACTAGAGGTTTAAGAGAAGCTATGAAAAATGAAGGTATTGACT
TTTCTCTGCCTTTAATAAAAGAAACTGCCCATAAGAAGAAAGGATCGGGAACAAGCTTGGGACACGGAGAGGAGCAAGCC
ATCAGTGATGAGGATGAAGAGGAAACTTTTTCCTGGTTGAAGGAGATGGGTGTGCAAGATAAAATTAAAAAGCCAGACAT
ACCCTCTATCGAGCTGCGGAAAGAAAAACATGCAGTGCAGATGGATCATAAGCTTGAGTCTGTTGTATTGGTGAAAGGAA
TCAACGCTTTTACCTTGCTCAATTTTTTGATCAACTCTTAAGAGTCTAGTGGCCACCTCTGGTCCACAGGCAGGACTTCC
ACCAGCCCTGTTATCCCCTGGAGCTTTCAGAGGCGCCACCATGCAAACGCTTAGGGCACGAAGCGTCAACGTGAAGACAG
AAGCTCCTTCTGGATGCAAAGATCAGTTTAGTTTGGAGATCGCAGGTCCGGTGATGCCTCATTCGCTACACTCTGTGCTA
ATGCTCCTCCAATCTTCTCAGAGCGGGTCTTTTTCAGCAGGACCGTACACACATGAGTCAACTGCTGTATTTTATAGCAG
CCCGCCAGTGGATAAAGTACTGGACAAGGAAATTGTTCATAAGGAACTTGCCAACTGTGGGTTGCACCCTAAAACTCTGG
AGCACCTAAGTCAGATACCATTACTGGGGAAATCATCCTTCCAG
ORF - retro_etel_2077 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.21 % |
Parental protein coverage: |
71.22 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | FTSSQPFAWADHLKAHEEAQ-GLVQHCRATEVTLPQRIQDPRLSTELRCAFQQSLVYWLHPSLPWLPLFP |
| F....PFAWADHLKAHEEAQ.GL.QHCRATEVTLPQR.QDPRL...LR.AFQQSLVYWLHPSLPWLPLFP |
Retrocopy | FSPLNPFAWADHLKAHEEAQ<GLIQHCRATEVTLPQRLQDPRLAAGLRWAFQQSLVYWLHPSLPWLPLFP |
|
Parental | RIGADRRMAGKTSPWSNDDALQHVLMSDWSVSFTSLYNLLKTKLCPYFYICTYQFTVLFRAAGFAGSDVI |
| RIG.DRRMAGKTSP.SNDDALQHVLMSDWSVSFTSLY.LLKTKLCPYFYI..YQFTVLFRAAGF.GS.VI |
Retrocopy | RIGTDRRMAGKTSPRSNDDALQHVLMSDWSVSFTSLYSLLKTKLCPYFYIRPYQFTVLFRAAGFPGSAVI |
|
Parental | TALISPTTRGLREAMKNEGIDFSLPLIKETAHKKKRSGTSLGHGEEQAISDEDEEETFSWLKEMGVQDKI |
| T.LISPTTRGLREAMKNEGIDFSLPLIKETAHKKK.SGTSLGHGEEQAISDEDEEETFSWLKEMGVQDKI |
Retrocopy | TVLISPTTRGLREAMKNEGIDFSLPLIKETAHKKKGSGTSLGHGEEQAISDEDEEETFSWLKEMGVQDKI |
|
Parental | KKPDILSIKLRK-KHEVQMDHKPES-VLVKGINTFTLLNFLIN-CKSLVATSGPQAGLPPTLLSPVAFRG |
| KKPDI.SI.LRK.KH.VQMDHK.ES.VLVKGIN.FTLLNFLIN..KSLVATSGPQAGLPP.LLSP.AFRG |
Retrocopy | KKPDIPSIELRKEKHAVQMDHKLESVVLVKGINAFTLLNFLIN>LKSLVATSGPQAGLPPALLSPGAFRG |
|
Parental | ATMQMLKARSVSVKTQAPSGYREQFSLEITGPVMPHSLHSVLTLLQSSQSGSFSAGLYTHEPTAVFNSSP |
| ATMQ.L.ARSV.VKT.APSG...QFSLEI.GPVMPHSLHSVL.LLQSSQSGSFSAG.YTHE.TAVF.SSP |
Retrocopy | ATMQTLRARSVNVKTEAPSGCKDQFSLEIAGPVMPHSLHSVLMLLQSSQSGSFSAGPYTHESTAVFYSSP |
|
Parental | PVDKVLDKDIVHKELANCGLHPKTLEQLSQIPLLGKSSLQ |
| PVDKVLDK.IVHKELANCGLHPKTLE.LSQIPLLGKSS.Q |
Retrocopy | PVDKVLDKEIVHKELANCGLHPKTLEHLSQIPLLGKSSFQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_2077 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.