RetrogeneDB ID: | retro_etel_2087 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_52839:1997..2743(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UQCRC2 | ||
Ensembl ID: | ENSETEG00000001084 | ||
Aliases: | None | ||
Description: | ubiquinol-cytochrome c reductase core protein II [Source:HGNC Symbol;Acc:12586] |
Percent Identity: | 94. % |
Parental protein coverage: | 54.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LHYYVQNNFTSARMALIGLGVSHPVLKQVAEQFLNMRGGLGLSGAKSVYRGGEVREQNGDSLVHAVLVAE |
LH.YVQNNF.S.RMALIGLGVSHPVLKQVAEQFLNMRGGLGLSGAKSVY.GGEV.E.NG.SLV.AV.VAE | |
Retrocopy | LHSYVQNNFMSERMALIGLGVSHPVLKQVAEQFLNMRGGLGLSGAKSVYCGGEV*EENGGSLVPAVPVAE |
Parental | SAAIGSAEANVFSVLQHVLGAGPHVKRGSNATNALYQAVAKGIHQPFDVSAFNASYSDSGLFGIYTVSQA |
SAAIGSAEANVFSVLQHVLGAG.HVKRGSNATNALYQAVAKGIHQPFDVSAFNASYSDSGLFGIYTVSQA | |
Retrocopy | SAAIGSAEANVFSVLQHVLGAGSHVKRGSNATNALYQAVAKGIHQPFDVSAFNASYSDSGLFGIYTVSQA |
Parental | AAAGDVIRAAYDQVKTIAQGGLSDTVLQAAKNKLKAAYLMSVESSEGFLNEVGLQALVAGSYVPPTTVLQ |
AAAGDVI.AA.DQVKTIAQGGLSDTVLQAAKNKLKAAYLMSVESSEGFLNEVGLQALVAGS.VPPTTVLQ | |
Retrocopy | AAAGDVIKAACDQVKTIAQGGLSDTVLQAAKNKLKAAYLMSVESSEGFLNEVGLQALVAGSCVPPTTVLQ |
Parental | QID-AVTATDVKNAAVKFVSGKKSMATSGNLGHTPFLDEL |
QID..VTATDVKNAAVKFVSGKKSMATSGNLGHTPFLDEL | |
Retrocopy | QID<PVTATDVKNAAVKFVSGKKSMATSGNLGHTPFLDEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021651 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000017756 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009116 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001084 | 1 retrocopy |
retro_etel_2087 ,
|
Homo sapiens | ENSG00000140740 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015379 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003345 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018287 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000007645 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016849 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012185 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003891 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005478 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000000419 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007174 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007871 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010670 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010785 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010914 | 1 retrocopy |