>retro_etel_2092
AGACTTTTCGTCCACTGGGACCTGCTGCACATCCCTTGCCTCAAGATTCTCCTCAGCAAAGGCCTGGGGCTGGGCCTTGT
ATCTAGCTCCCTGCTATTAAAACCGCCCCTGGTGTTTAAAATCCTGGGCGCCAAGAATGCAGACAGGCTGAGTCTTCAGT
GGGTCATGCTGGAGCTACTGACCTTGACTGGGACTATGGTCTACAGCATCACCAACAAGCTTCCCTTTGGCTCTTGGGGT
GAAGCCCTCTTCCTGATGCTCCAGACGCTCACCACTGGCTGCCTGGTCCTGCACTGCAGGGGCAGACTGTGAAAGGAGCT
GCTTTCCTAGTCGGTTCCACCCTGCTCCTGTTGCTGCTGCTCTCACCCCTGACCCCGCTGGCGTGGTCACTTGGCTCCAG
GCTTCCAGCGTGCCTGCTGTGGTAGGGGGCAGGCTGCTCCAGGCCACCACCAACGACTACAACAACGGGCACACAGGTCA
GCTCTTGGCCGCCACAGTCTTTCTCTTGTTTGGGGGCTCCCTGGCCCAGATCTTCAACCCCATTTAGGAAATGGGAGACC
CTCTCGTGGCTGGCACC
ORF - retro_etel_2092 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80. % |
Parental protein coverage: |
89.25 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | RLFVQWDLLHVPCLKILLSKGLGLGIVSASLLVKLPQVFKILSAKSAEGLSLQSVMLELVALTGTMVYST |
| RLFV.WDLLH.PCLKILLSKGLGLG.VS.SLL.K.P.VFKIL.AK.A..LSLQ.VMLEL..LTGTMVYS. |
Retrocopy | RLFVHWDLLHIPCLKILLSKGLGLGLVSSSLLLKPPLVFKILGAKNADRLSLQWVMLELLTLTGTMVYSI |
|
Parental | TNKFPFSSWGEALFLMLQTLTIGFLVLHYR-GQTVKGVAFLVCYTLLLLLLLSPLTPLA-VVTWLQASNV |
| TNK.PF.SWGEALFLMLQTLT.G.LVLH.R.GQTVKG.AFLV..TLLLLLLLSPLTPLA.VVTWLQAS.V |
Retrocopy | TNKLPFGSWGEALFLMLQTLTTGCLVLHCR<GQTVKGAAFLVGSTLLLLLLLSPLTPLA<VVTWLQASSV |
|
Parental | PAVVGGRLLQATTN-YYNGHTGQLSAITVFLLFGGSLARIFTSIQEK-EPFMAGT |
| PAVVGGRLLQATTN.Y.NGHTGQL.A.TVFLLFGGSLA.IF..I.E...P..AGT |
Retrocopy | PAVVGGRLLQATTNDYNNGHTGQLLAATVFLLFGGSLAQIFNPI*EMGDPLVAGT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_2092 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
4 retrocopies.