RetrogeneDB ID: | retro_etel_2095 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_54691:435..1019(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RTFDC1 | ||
Ensembl ID: | ENSETEG00000003143 | ||
Aliases: | None | ||
Description: | replication termination factor 2 domain containing 1 [Source:HGNC Symbol;Acc:15890] |
Percent Identity: | 78.57 % |
Parental protein coverage: | 63.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KGSTKG-DKHDDLQRARFICPVVGVEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEHDVIV |
KG..KG.DKHDDLQRAR.ICP.VG.EM.G.H.F.FLRCC.CVFSE.ALKEIKAEVCHTCG.AFQE.D..V | |
Retrocopy | KGNAKG<DKHDDLQRARVICPGVGLEMHGPHSFGFLRCCACVFSELALKEIKAEVCHTCGTAFQEDDIFV |
Parental | LNGTKGDVELLKARMEERRLRAKLGKKTKKPKAAETVSKPDVPEESTGPSAVTGGKPEETSLDSRE-KAG |
LNGTKGD.ELLK..MEER.LRAKLGKKTKKPKAA.TVSKP.VPEE..GPSAV...KPEE..LDS.E.KAG | |
Retrocopy | LNGTKGDLELLKTPMEERQLRAKLGKKTKKPKAAGTVSKPGVPEEGAGPSAVRSRKPEEMNLDSKEKKAG |
Parental | LVPKGPAPGGSASGKAGKAPCAAMKRPIDDSHQSETYKSLFTSHSSAKRSKEESAH |
L.PKG.APGGSASGKAGKAPCA..K..I..SHQ.ET.KSLFTSHSSA.RSKEESAH | |
Retrocopy | LAPKGTAPGGSASGKAGKAPCADTKPTIAYSHQPETHKSLFTSHSSATRSKEESAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000027390 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000003143 | 1 retrocopy |
retro_etel_2095 ,
|
Mus musculus | ENSMUSG00000027502 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000009249 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004444 | 1 retrocopy |