RetrogeneDB ID: | retro_etel_210 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_3675:40829..41244(-) | ||
Located in intron of: | ENSETEG00000002586 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COMMD8 | ||
Ensembl ID: | ENSETEG00000020257 | ||
Aliases: | None | ||
Description: | COMM domain containing 8 [Source:HGNC Symbol;Acc:26036] |
Percent Identity: | 52.08 % |
Parental protein coverage: | 76.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | SVWDSTEWIHVREDITTF-FKDAVGKSLSDEEISQ-QLNQLHSFHQEAIMK-CLRSRKDEIKQALLGEIA |
S.WDSTEWI.V.ED.TT..FK..VGK.LS..E.SQ.....LH..HQ...MK..L.SR...I.Q.LL.E.A | |
Retrocopy | SAWDSTEWITVLEDSTTY>FKATVGKNLSEDELSQ<VVPLLHPCHQGETMK<ILKSRNEGIGQVLLREVA |
Parental | AISSAQLQDFDWQLKLALSSDKIAALQMP-LLTLHLDVKEKGAATPCCVEMSREELQSLIESLEAANKEV |
.IS..QLQ.FDW..KLALS.DK....Q.P..L.L.LD.KE.G...P...EM....L.S...SLEA....V | |
Retrocopy | DISPGQLQGFDWPVKLALSRDKVTS-QWP<SLNLGLDLKENGDVKPYSAEMRKAGLRSRTISLEAVQESV |
Parental | LQVQ |
LQV. | |
Retrocopy | LQVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001348 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020257 | 3 retrocopies |
retro_etel_1416, retro_etel_182, retro_etel_210 ,
|
Felis catus | ENSFCAG00000023811 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011376 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021777 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000000739 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001221 | 1 retrocopy |