RetrogeneDB ID: | retro_etel_2107 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_62160:1007..1378(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DESI1 | ||
Ensembl ID: | ENSETEG00000005136 | ||
Aliases: | None | ||
Description: | desumoylating isopeptidase 1 [Source:HGNC Symbol;Acc:24577] |
Percent Identity: | 86.4 % |
Parental protein coverage: | 73.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MEPPHLYPVKLYVYDLSKGLARRLSPIMLXXXXXXXXHTSIVVHRD-EFFFGSGGISSCPPGGTLLGPPD |
MEPPHLYPV.LYVYDLSKGLARR.SPIML........HTSIVVHR..EFFFGSGGISSCPPGGTLLGPPD | |
Retrocopy | MEPPHLYPVMLYVYDLSKGLARRISPIMLGKQLEGIWHTSIVVHRE<EFFFGSGGISSCPPGGTLLGPPD |
Parental | SVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKI |
SVVDVGSTEV...IFLEYLSSLGESLFRGEAYNL.EHNCNTFSNEVAQFLTGR.I | |
Retrocopy | SVVDVGSTEVSKDIFLEYLSSLGESLFRGEAYNLLEHNCNTFSNEVAQFLTGREI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018941 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005136 | 1 retrocopy |
retro_etel_2107 ,
|
Monodelphis domestica | ENSMODG00000016577 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000009480 | 1 retrocopy |