RetrogeneDB ID: | retro_etel_2108 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_63024:11..578(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000006094 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP1 | ||
Ensembl ID: | ENSETEG00000014741 | ||
Aliases: | None | ||
Description: | poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647] |
Percent Identity: | 68.23 % |
Parental protein coverage: | 51.66 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | KEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA |
..V.SII...G........ESGA.INISEG.C.ER.I...GPTNAIFKAF.MIIDKLE.DI.SSM.NSTA | |
Retrocopy | RQVVSIIET*GSRL*ESTMESGA*INISEGHCLERVISTTGPTNAIFKAFTMIIDKLEKDIISSMSNSTA |
Parental | ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITXXXXXXXIIECVKQI |
ASR.PVTLRLVVPA.Q..SLIGKGGCKIKEIRESTGAQVQVAG.MLPNSTERAIT.........ECVKQI | |
Retrocopy | ASRTPVTLRLVVPATQ*DSLIGKGGCKIKEIRESTGAQVQVAGNMLPNSTERAITMAGVPQSVTECVKQI |
Parental | CVVMLES---PPKG--VTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTT |
C.VMLE.....P.G...TIPY.P.P.SSPVI.AGGQDR.S...D.A..PH.T | |
Retrocopy | CLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCS---DAAGYPHAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |