RetrogeneDB ID: | retro_etel_211 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_3697:242945..243468(+) | ||
Located in intron of: | ENSETEG00000016148 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM98B | ||
Ensembl ID: | ENSETEG00000019041 | ||
Aliases: | None | ||
Description: | family with sequence similarity 98, member B [Source:HGNC Symbol;Acc:26773] |
Percent Identity: | 72.88 % |
Parental protein coverage: | 56.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | FLKEMACPYSALISGDVNDRLKKDDL-KLLLFLSTELQALQILQNKKLKSSQLDKKSEIYQEVQAICDTL |
F.KEMACPYSA.ISG...DRLK.DD....LLF.S.E.QALQILQN.KL..SQLD...E...EV.AICDTL | |
Retrocopy | FVKEMACPYSARISGHTQDRLKEDDCWQSLLF*SMEFQALQILQNQKLTRSQLDENHEMH*EVKAICDTL |
Parental | AVPKSTTSDVPLMLSQVEAKVKDILAKVQNNHVGKPLL-KIDLNQEKAEQLEKINDALC-CEYECRRRML |
AVPKSTTSDV.LMLS.V.AKVKD.LAKVQ.NHVGKPLL...DLNQE.AEQLE...DAL...E.EC.RRML | |
Retrocopy | AVPKSTTSDVLLMLSRVAAKVKDLLAKVQRNHVGKPLL<ELDLNQEEAEQLERTHDALS<SEHECCRRML |
Parental | VKRLDVTVQSFGWSDRAKVKTDDIARIYQPKRYALSP |
VKRLDVT.QS.G.SDRA.VKTD..ARIYQPK.YA.SP | |
Retrocopy | VKRLDVTGQSVGRSDRAEVKTDNKARIYQPKPYARSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000019041 | 1 retrocopy |
retro_etel_211 ,
|
Pongo abelii | ENSPPYG00000006336 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005366 | 1 retrocopy |