RetrogeneDB ID: | retro_etel_2117 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_65346:2603..3187(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000013920 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000012894 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.27 % |
Parental protein coverage: | 94.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVFRRFVEVGRVA-YISFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAR |
.VFR.FVEVGRVA.YISFGPH.GKLV..VDVIDQNRAL.DG.CTQVR..AMPFKCMQ.TDFILKFPHSAR | |
Retrocopy | VVFRGFVEVGRVA<YISFGPHVGKLVVTVDVIDQNRALFDGACTQVRKKAMPFKCMQRTDFILKFPHSAR |
Parental | QKYVRQAWQKADINTKWAATRWAKKIEAREKKAKMTDFDRFKVMKAKKMRNRLIKYEVKKLQRAALLKAS |
QKYVRQAWQKADINTK.AATRWA.K.EAR..K.KMTDFDRFK.MKAKK.RNRLIKYEV.KLQRAALLKAS | |
Retrocopy | QKYVRQAWQKADINTKRAATRWAQKFEARQNKVKMTDFDRFKIMKAKKRRNRLIKYEVMKLQRAALLKAS |
Parental | PKKASAAKGAAAAAAAKVPAKKGAAAATAGKKAPAQKAPAQKEKAAGQKAGPPKAQKAPAQK |
P.KASA.K..A...AA...A.K.A.A.....KA..QKA...K.....QKA....AQK.PA.K | |
Retrocopy | PQKASAVKVPAKKGAAATTAGKKAPAQK--EKAAGQKAAPLK----AQKAQKAPAQKTPAPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |