RetrogeneDB ID: | retro_etel_2132 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_7222:2319..2841(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB11A | ||
Ensembl ID: | ENSETEG00000004920 | ||
Aliases: | None | ||
Description: | RAB11A, member RAS oncogene family [Source:HGNC Symbol;Acc:9760] |
Percent Identity: | 75.71 % |
Parental protein coverage: | 80.65 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ |
MGTRD.EY..LF.VVL.G.S.VGKSNLLSRFT.NEF.LESKST.G.EFAT.S.QVDG..IKAQI.DTAGQ | |
Retrocopy | MGTRDYEYNKLFQVVLSGESDVGKSNLLSRFT*NEFTLESKSTLGIEFATGSVQVDGTIIKAQIRDTAGQ |
Parental | ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS-DLRHLRAVPTDEA |
ERY.A.TSA.YRGAVGALLVYDI..HLTYE..ERWLKELRD.ADSN...........D..HLRAVPTDEA | |
Retrocopy | ERYGAVTSASYRGAVGALLVYDIPEHLTYEHGERWLKELRDCADSN-IVIMLPGNK<DVSHLRAVPTDEA |
Parental | RAFAEKNGLSFIETSALDSTNVEAAFQ-TILTEIHHT |
RA.AEKNG.SFIETSALDST.VEAAFQ.TILTEI.H. | |
Retrocopy | RALAEKNGWSFIETSALDSTQVEAAFQ>TILTEIYHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018959 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007333 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004920 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000010340 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000018042 | 3 retrocopies | |
Homo sapiens | ENSG00000103769 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014252 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000008820 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000008006 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012853 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000009335 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006573 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007188 | 1 retrocopy |