RetrogeneDB ID: | retro_etel_2134 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_72946:3265..3966(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX1 | ||
Ensembl ID: | ENSETEG00000004125 | ||
Aliases: | None | ||
Description: | Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] |
Percent Identity: | 61.44 % |
Parental protein coverage: | 72.76 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | NDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR |
N.TKEDVFV.QTAIKKN.PRK.L.SVGDGETVE.D.V..EKG.EAANVTG..G.PVQGSK.AAD.N.YR. | |
Retrocopy | NGTKEDVFVPQTAIKKNDPRKSLCSVGDGETVETDAV*REKGEEAANVTGTSGIPVQGSKHAADGNQYRC |
Parental | YPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYY-MRRPYGRRPQYSNPPVQGE |
YP.RRGPPRN.QQNYQNSESG.K..GSESAP.GQAQQ..PY.R..F.P.Y....PY..RP.YS..P.Q.E | |
Retrocopy | YPCRRGPPRNFQQNYQNSESGGKDNGSESAPQGQAQQHQPYHRQWFLPHY<QQGPYEHRPHYSSAPMQ-E |
Parental | VMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQDETQGQQPPQRRYRRNFNY |
VM.GADNQGAGEQG..VR..M..G.RP.F..GPP.Q.QP...G.........ETQGQ.PP..RY..N..Y | |
Retrocopy | VMGGADNQGAGEQGSLVRHSML*GHRP*FCSGPPHQQQPSLEGDDIKDKEINETQGQLPPPCRYH*NLSY |
Parental | RRRRPDNPKPQDGKETKAADPPAENS |
....PDN.KPQ............EN. | |
Retrocopy | PHGCPDNLKPQNDRDKNS*STS*ENA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |