RetrogeneDB ID: | retro_etel_2184 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_93618:1012..1802(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000019930 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.15 % |
Parental protein coverage: | 63.66 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | HHYPGPGNHFWKC-LFMSGLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQK |
HHYPGPGNHFW...LFMS.LSEVQL.HMDDHTLPGKYG.GFTNMVER.TPGSKDLSSKEF.EGGRILVQK | |
Retrocopy | HHYPGPGNHFWHW>LFMSRLSEVQLPHMDDHTLPGKYGVGFTNMVERMTPGSKDLSSKEFHEGGRILVQK |
Parental | LQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHY |
LQKYQPRI.VFNGKCIYEI..KEVFG.K.KNLEFGLQPHKIPDTETLCY.MPSSSARCAQFPRAQDKVHY | |
Retrocopy | LQKYQPRIVVFNGKCIYEISNKEVFGMKIKNLEFGLQPHKIPDTETLCYAMPSSSARCAQFPRAQDKVHY |
Parental | YIKLKDLRDQLKGVVRNTDIQEVQYTFDLQLAQEDAKKMAVKEEKYDPGYEAAYGGAYGENVCHREPGSC |
YIKLK.LRDQL.GV.RNTDI.EVQYTFDLQLAQ.DAKKMAVKEEKYDP.YEAAYGGAYGENVCHRE.GSC | |
Retrocopy | YIKLKHLRDQL*GVERNTDI*EVQYTFDLQLAQKDAKKMAVKEEKYDPCYEAAYGGAYGENVCHRELGSC |
Parental | SSNGIT-EGAELPGESTLSDNPNGQWMTQSFTDQIPSFNSPCETQT-PEEGNQA |
SSN..T.EGAEL.GESTLSDNPNGQWMTQSFTDQIPSFNSPCETQT.PEEGNQA | |
Retrocopy | SSNELTAEGAELHGESTLSDNPNGQWMTQSFTDQIPSFNSPCETQTPPEEGNQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000013722 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019930 | 1 retrocopy |
retro_etel_2184 ,
|
Homo sapiens | ENSG00000139372 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003813 | 1 retrocopy | |
Mus musculus | ENSMUSG00000034674 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016313 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000027124 | 1 retrocopy |