RetrogeneDB ID: | retro_etel_2194 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_95528:1135..1729(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSETEG00000001584 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 78.71 % |
Parental protein coverage: | 80.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAAEALGDEWKGYVVRISGGNDKQGFP-MKQGVLT |
.K.NISFPATGCQK.IEVDDE.KLRTFYE..MATEVAAEALGDEWKG.VVRISGGNDK..FP.MKQGVL. | |
Retrocopy | VKPNISFPATGCQKRIEVDDECKLRTFYET*MATEVAAEALGDEWKGCVVRISGGNDKV-FP<MKQGVLA |
Parental | HGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGLKRAS |
H.RV.LLLSKG.SCYRPRR.GE..RKSVRGCIVDAN.SVLNLVIVK.GE.DIPGLTDTTVPRRLG..RAS | |
Retrocopy | HSRVCLLLSKGRSCYRPRRPGEWTRKSVRGCIVDANVSVLNLVIVKRGEIDIPGLTDTTVPRRLGPQRAS |
Parental | RIRKLFNL-SKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTK |
RIRKLFNL....D.VRQY.VRKPLNKE.KKPRTKAP.IQRLVTP.......R..A.KK.R.. | |
Retrocopy | RIRKLFNL>KEDD-VRQYTVRKPLNKEDKKPRTKAPMIQRLVTPSACALP*RSSAPKKTRRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |