RetrogeneDB ID: | retro_etel_2199 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_97135:4426..4893(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSETEG00000011380 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 80.25 % |
Parental protein coverage: | 54.77 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KAFTKYCKKWQDDEGK-KQLDKDFSSMKKYCQVIRVIAHTQMRL-LPLRQKKAHLMEIQVNGGSVAEKLD |
KAFTKYCKKWQ.DEGK.K...KD.SSMKKYCQVIR..AHTQM.L.L.LRQ.KAHLM.IQV.GGS.AEKLD | |
Retrocopy | KAFTKYCKKWQEDEGK>KHPEKDVSSMKKYCQVIRGVAHTQMHL>LVLRQNKAHLMKIQVKGGSMAEKLD |
Parental | WAREKLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFS |
WA.E.LEQQV.VNQVFGQD.MIDVIGVT.G.GYK.VTSRWHTKKLP.KTHRGLRKVACI.AWHPA..AFS | |
Retrocopy | WA*E*LEQQVLVNQVFGQDKMIDVIGVTTGNGYKVVTSRWHTKKLP*KTHRGLRKVACIRAWHPACMAFS |
Parental | VARAGQKGYHYRTEINK |
VA...QK.YH.RTEINK | |
Retrocopy | VACTSQKVYHHRTEINK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |