RetrogeneDB ID: | retro_etel_236 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_3981:5865..6306(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000002439 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.79 % |
Parental protein coverage: | 96.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LSGAPARMAAVVLGGDTMGPERIFPNHTEELGPHVGPAEGTGDWSS-EEHEEEPEEVGAGPAGY-SYQPL |
LS.APA.M.AVVL.GDTMGPERIF.NH..ELGPHVG.AEGTG.W.S..E.E..P.EVGAGPAG...YQPL | |
Retrocopy | LSEAPAPMVAVVLEGDTMGPERIFLNHAVELGPHVGSAEGTGFWRS<HEEE--PKEVGAGPAGL>PYQPL |
Parental | NQDPEPEETEMAPVSDGEDAVADIQERIQAQGVHFPDPPLESEDEEEGATGLSSHSSIPMDPEHIEKVKR |
NQDPEPE.TEMAPV.DGEDA.ADIQERIQA.G.H.PDP.LESEDEEEGATGLSSHSSIPMDPEHIE.VKR | |
Retrocopy | NQDPEPEDTEMAPVGDGEDAIADIQERIQALGLHLPDPSLESEDEEEGATGLSSHSSIPMDPEHIELVKR |
Parental | TMAG-SPPAPG |
TMAG.S.PAPG | |
Retrocopy | TMAGISLPAPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012655 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005536 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001756 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004894 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000022111 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002439 | 1 retrocopy |
retro_etel_236 ,
|
Felis catus | ENSFCAG00000031337 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000013881 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012138 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000019002 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001565 | 2 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000002330 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008711 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017144 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000012294 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000006996 | 1 retrocopy |