RetrogeneDB ID: | retro_etel_24 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_322028:7310..8078(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000006002 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000000324 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.43 % |
Parental protein coverage: | 72.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QYQMEMMRSLRHVNIDHLHVGWYQSTFYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAY |
QYQMEMMRSLRHVN.DHLHVGWYQSTFYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAY | |
Retrocopy | QYQMEMMRSLRHVNNDHLHVGWYQSTFYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAY |
Parental | RLTPKLMEVCKEKDFSPEALKKATITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSS |
RLTPKLMEVCKEKDFSPEALKKATITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASS. | |
Retrocopy | RLTPKLMEVCKEKDFSPEALKKATITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADKHELLSLASSN |
Parental | HLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSKLFKP |
HL.KNLQLLM.RVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSKLFKP | |
Retrocopy | HLAKNLQLLMGRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSKLFKP |
Parental | PQAPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN |
PQAPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN | |
Retrocopy | PQAPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQEYNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000816 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005910 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000324 | 1 retrocopy |
retro_etel_24 ,
|
Macropus eugenii | ENSMEUG00000015663 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000004154 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022312 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007534 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008905 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009067 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014977 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001403 | 1 retrocopy |