RetrogeneDB ID: | retro_etel_268 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_4536:18154..18463(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA52 | ||
Ensembl ID: | ENSETEG00000003392 | ||
Aliases: | None | ||
Description: | ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458] |
Percent Identity: | 69.81 % |
Parental protein coverage: | 81.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV |
.QIFVKTL.GKTIT.E.EPS.TI..VKAKI....G.PP.QQ.L.FAGKQLEDG..LSD.NIQKESTLHLV | |
Retrocopy | VQIFVKTLVGKTITFEGEPSNTIKKVKAKILAR-GHPPNQQHLDFAGKQLEDGHILSDHNIQKESTLHLV |
Parental | LRLRGGIIEPSLRQLAQ-KYNCDKMICR-KCYARLH |
L.L.G.II..SL.QLAQ.K..C.KMIC..KCY..LH | |
Retrocopy | LLLCGDII*KSLSQLAQ>KHTCNKMICA<KCYTCLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |