RetrogeneDB ID: | retro_etel_28 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_318323:3678..4455(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000019221 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPIN1 | ||
Ensembl ID: | ENSETEG00000013719 | ||
Aliases: | None | ||
Description: | spindlin 1 [Source:HGNC Symbol;Acc:11243] |
Percent Identity: | 73.76 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPI |
MKTP....T.GQ..RA....AG..A.........KK.........P.SQ.RRN.VGCRI.HGWKEG..PI | |
Retrocopy | MKTPTAQETRGQQTRAA---AGLAAG--SANITKKKISQKKQRGRPSSQTRRNMVGCRISHGWKEGDEPI |
Parental | TQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEH |
TQWKGTVLDQVP.NPSLYL.KYDG.DCVYGLEL..DERV..L..L.DRVA.S..SDA.LA.T.IGKAVEH | |
Retrocopy | TQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSQVSDANLANTIIGKAVEH |
Parental | MFETEDGSKDEWRGMVLARAPIMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEV |
MFE.E.GSKDEWRGMVLA.APIM..WFYITYEKDPVLYMYQLLDDYKEGDLRIMP.SN.S.PAERE.G.V | |
Retrocopy | MFEGEHGSKDEWRGMVLAQAPIMRAWFYITYEKDPVLYMYQLLDDYKEGDLRIMPESNESLPAERESGGV |
Parental | VDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS |
VD.L.GK.VEY.KEDGSKR.GMVIHQVEAKPSVYFIKFDDDFHIYVYDLVK.S | |
Retrocopy | VDGLIGKHVEYTKEDGSKRIGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |