RetrogeneDB ID: | retro_etel_282 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_4714:44639..45050(+) | ||
Located in intron of: | ENSETEG00000011440 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEPT7 | ||
Ensembl ID: | ENSETEG00000015624 | ||
Aliases: | None | ||
Description: | septin 7 [Source:HGNC Symbol;Acc:1717] |
Percent Identity: | 69.01 % |
Parental protein coverage: | 50.36 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | VQLLLTIVDTPG-FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNR-RQMPDNRVQCCLYFIAPSGHGL |
VQLLLT.VDTPG.FGD.VD.S.CWQPVI..IDS..EDYLNAESRV.R.RQMP.NRV...L.FIAPSG.G. | |
Retrocopy | VQLLLTRVDTPG>FGDPVDDSSCWQPVINHIDSQVEDYLNAESRVPR<RQMPHNRVLYELPFIAPSGQGF |
Parental | KPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQE-HKIKIYEFP-ETDDEEENKLVKKI |
KPL..EFMKRLHEKV..IPL.AKAD.LTP...Q.FKKQI.K.....HKIKIYEF.....DE..NK.V.K. | |
Retrocopy | KPLESEFMKRLHEKVSAIPLTAKADSLTPGNYQ*FKKQITKKKSK>HKIKIYEFS<QKNDE-DNKVV*KD |
Parental | KD |
KD | |
Retrocopy | KD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000012276 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015624 | 3 retrocopies |
retro_etel_1263, retro_etel_282 , retro_etel_517,
|
Homo sapiens | ENSG00000122545 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000001175 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000021167 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001673 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006015 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017639 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019080 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006545 | 9 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000003788 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021378 | 3 retrocopies |