RetrogeneDB ID: | retro_etel_286 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_4749:148493..149429(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000000569 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO2 | ||
Ensembl ID: | ENSETEG00000007582 | ||
Aliases: | None | ||
Description: | enolase 2 (gamma, neuronal) [Source:HGNC Symbol;Acc:3353] |
Percent Identity: | 81.09 % |
Parental protein coverage: | 71.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KAGAAERDLPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVY |
.AGA.E...PLYRHIA.LAGNS..ILPVPAFNVINGGSHAGNKLAMQEFMILPVGA..F..AMR.GAEVY | |
Retrocopy | QAGAVEKGVPLYRHIADLAGNSEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFKEAMRIGAEVY |
Parental | HTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDL |
H.LK.VIK.KYGKDATNVGDEGGFAPNILEN.EALEL.K.AI.KAGYT...VIGMDVAASEF...GKYDL | |
Retrocopy | HNLKNVIKEKYGKDATNVGDEGGFAPNILENKEALELLKNAIGKAGYTDRVVIGMDVAASEFFKSGKYDL |
Parental | DFKSPPDPSRCITGDQLGSLYQDFVRNYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIE |
DFKSP.DPSR.I..DQL..LY..F..NYPVVSIEDPF.QDDW.AW.KFTA..GIQ.VGDDLTVTNPKRI. | |
Retrocopy | DFKSPDDPSRYISPDQLADLYKSFIANYPVVSIEDPFHQDDWDAWAKFTASSGIQVVGDDLTVTNPKRIA |
Parental | RAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPC |
.AV.EK.CNCLLLKVNQIGSVT...QACKLAQ.NGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT.APC | |
Retrocopy | KAVGEKSCNCLLLKVNQIGSVTKSLQACKLAQPNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTSAPC |
Parental | RSERLAKYNQLMRIEEELGGEARFAGHNFRNP |
RS.RLAKYNQ..RIEEELG..A.FAG..FRNP | |
Retrocopy | RSARLAKYNQILRIEEELGSKAKFAGQKFRNP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014523 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007582 | 8 retrocopies |
retro_etel_1077, retro_etel_1696, retro_etel_1837, retro_etel_2120, retro_etel_227, retro_etel_286 , retro_etel_30, retro_etel_544,
|
Felis catus | ENSFCAG00000004282 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001774 | 1 retrocopy |