RetrogeneDB ID: | retro_etel_32 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_111597:445..880(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000001072 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB2A | ||
Ensembl ID: | ENSETEG00000010340 | ||
Aliases: | None | ||
Description: | RAB2A, member RAS oncogene family [Source:HGNC Symbol;Acc:9763] |
Percent Identity: | 55.36 % |
Parental protein coverage: | 52.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR |
LQIWDTAGQE.FR.IT.SYYR.A..A.L.YDIT.R..F.....W.ED.R....SN.V..LIGNKSDLE.. | |
Retrocopy | LQIWDTAGQERFRTITQSYYRSANRAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLEEL |
Parental | REVKKEEGEAFAREHGLI-FMETSAKTASNVEEAFINTAKEI |
REV...E....A.........ETSAK..SNVEEAF...A.E. | |
Retrocopy | REVPLAEVQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000007700 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004920 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000010340 | 2 retrocopies |
retro_etel_203, retro_etel_32 ,
|
Echinops telfairi | ENSETEG00000018042 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000008556 | 2 retrocopies | |
Mus musculus | ENSMUSG00000047187 | 1 retrocopy |