RetrogeneDB ID: | retro_etel_323 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_5349:307127..307584(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRA2A | ||
Ensembl ID: | ENSETEG00000007250 | ||
Aliases: | None | ||
Description: | transformer 2 alpha homolog (Drosophila) [Source:HGNC Symbol;Acc:16645] |
Percent Identity: | 62.66 % |
Parental protein coverage: | 54.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SRSRRHSHR-RYTRSRSHSHSHRRRSRSRSYTPDYRRRRSRSRSHSPMSNR-RRHTGSRANPDPNTCLGV |
SRSR..S.R...TRSRSH.H...RRS.SR.Y.........RS.SH...S.R.RRH.G.RANPDPN.CLG. | |
Retrocopy | SRSRSRSRR<KFTRSRSHCH---RRSCSRCYH*LSQVAQPRSFSHIYSSTR<RRHVGNRANPDPNCCLGE |
Parental | FGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD |
.GLS..TTERDLR.VFS.YGP......VYDQ...RSRG.AFV.FE..DD..EA.ERANGMELDG.RIRVD | |
Retrocopy | LGLSFHTTERDLRDVFSKYGPIADESSVYDQQSMRSRGCAFVFFENVDDAEEAKERANGMELDGCRIRVD |
Parental | YSITKRAHTPTPGIYMGR |
.SITKR.HTP.P...MGR | |
Retrocopy | FSITKRPHTPAPSVCMGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001130 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001509 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007250 | 2 retrocopies |
retro_etel_323 , retro_etel_692,
|
Echinops telfairi | ENSETEG00000013178 | 1 retrocopy | |
Homo sapiens | ENSG00000164548 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009053 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013480 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014794 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009733 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000017728 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018988 | 1 retrocopy | |
Sorex araneus | ENSSARG00000012900 | 1 retrocopy |