>retro_etel_33
GAAGTGAAGGACAGAGATGTGCAGGTCGTCGAGCTGCCCATCGTGGACAGGCTTGCTCCCCGTCCTCCGTATCTACCCCT
GGCCGTCCCGGAAGACCTGGCAGAGCGCCTCATTCGCGTCCACGGGGACCCTGCAGTGTGGTGGGTGGCCCAGTTTGTCA
AATACTTGATCCGCCCCCAACCTTGGCTGGAAAAGGAAATAGAGGTGGCCACCGAGAAGCTCGGTTTCAAGCATCCGGTG
GTCGGCGTCCACGTCCGACGCACAGACAAAGTGGGAGCAGAAGCAGGCTTCCATCAAATTGAGGAGTACATGGTGCACGT
GGAAGGACATTTTCAGCTTCTGGCGTGCAGGATGCAAGTGGACACAAAGAGAGTGTACTTGGCCACAGACGACCCTTTTT
TATTAAAGGAGGCACAAACAAAGTACCCTGATTATGAATTTATTAGTAATAACTCCATCTCCTGGGCAGCTGGACCACAC
AGTCGATACTCAGAACAGTCCCTGCGGGGGGTGATCCTGGATGTGCACTTTCTCTCCCAGGCTGACTTCCTCGTGTGCAC
CTTCTCATCCCAGGTCTGTCGAGCTGCTTACGAGATCATGCAAACGCTGCATCCCGACGCCTCGGCGAATTTCCACTCTT
TGGACGACATCTACTATTTTGGGGGCCAGGATGCCCACAACCAGGTTGCCCTCTATCCTCACCGTCCTCGAACCACAGGT
GAAATCCCCATGGAGCCGGGAGACATTATCAGTGTGGCTGGAAACCACTGGGATGGCTATTCCAAAGGCGTCAACAGAAA
GCTGAGAAGGATGGGCCTCTATCCCTCCTACAAAGTTCGGGAGAAGATCGAAACAGCCAAGTACCCCACCTATCCCGAGG
CCGAGAAA
ORF - retro_etel_33 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.15 % |
Parental protein coverage: |
51.48 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | EVKDKSVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPWLEKEIEEA |
| EVKD..VQVVELPIVD.L.PRPPYLPLAVPEDLA.RL.RVHGDPAVWWV.QFVKYLIRPQPWLEKEIE.A |
Retrocopy | EVKDRDVQVVELPIVDRLAPRPPYLPLAVPEDLAERLIRVHGDPAVWWVAQFVKYLIRPQPWLEKEIEVA |
|
Parental | TKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRLQVDKRRVYLATDDPSLLKEAKT |
| T.KLGFKHPV.GVHVRRTDKVG.EA.FH.IEEYMVHVE.HFQLLA.R.QVD..RVYLATDDP.LLKEA.T |
Retrocopy | TEKLGFKHPVVGVHVRRTDKVGAEAGFHQIEEYMVHVEGHFQLLACRMQVDTKRVYLATDDPFLLKEAQT |
|
Parental | KYPSYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQTLHPDASAN |
| KYP.YEFIS.NSISW.AG.H.RY.E.SLRGVILD.HFLSQADFLVCTFSSQVCR.AYEIMQTLHPDASAN |
Retrocopy | KYPDYEFISNNSISWAAGPHSRYSEQSLRGVILDVHFLSQADFLVCTFSSQVCRAAYEIMQTLHPDASAN |
|
Parental | FHSLDDIYYFGGQNAHNQIAVYPHQPRTADEIPMEPGDVIGVAGNHWDGYSKGVNRKLGKTGLYPSYKVR |
| FHSLDDIYYFGGQ.AHNQ.A.YPH.PRT..EIPMEPGD.I.VAGNHWDGYSKGVNRKL...GLYPSYKVR |
Retrocopy | FHSLDDIYYFGGQDAHNQVALYPHRPRTTGEIPMEPGDIISVAGNHWDGYSKGVNRKLRRMGLYPSYKVR |
|
Parental | EKIETVKYPTYPEAEK |
| EKIET.KYPTYPEAEK |
Retrocopy | EKIETAKYPTYPEAEK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_33 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.