>retro_etel_34
ATGCCGAAAACCAAGTCGGGCGCGAGCGGCCGGCGCCGCGAGCGGCAGGAACAGCGCCGGGAACTGAAGAGCGCCGGAGG
ACTCATGTTCAACAAGGGGATTGGGCAGCACATTTTGAAAAATCCTCTCATTGTTAACAGCATTATCGACAAGGCTGCCT
TGAGACCGACCGATGTTGTCCTGGAAGTTGGACCTGGAACTGGCAACATGACTGTAAAGTTGCTAGAAAAGGCAAAAAAG
GTAGTTGCCTGTGAACTTGACCCCAGGCTAGTAGCTGAGCTTCACAAAAGAGTGCAGGGCACTCCCATGGCCAGCAAACT
TCAAGTCCTGGTGGGTGATGTGTTGAAAGCAGACTTGCCGTTCTTTGATGCCTGTGTGGCAAATTTGCCTTATCAGATAT
CGTCTCCTTTTGTCTTCAAGCTGTTGCTGCACAGGCCTTTCTTTAGATGTGCGATACTCATGTTTCAAAGGGAATTTGCG
CTCCGGCTGGTTGCAAAACCTGGAGATAAGCTGTACTGCAGACTGTCCATCAATACACAGCTGTTAGCACGGGTAGACCA
TCTAATGAAAGTTGGGAAAAACAACTTCAGACCACCACCCAAGGTAGAATCTAGTGTCGTAAGGATAGAACCTAAGAATC
CGCCACCGCCTATCAATTTTCAGGAATGGGATGGGCTTGTAAGAATCACCTTCGTTAGGAAAAACAAGACCCTGTCTGCT
GCATTTAAGTCAAGTGCTGTACAACAGCTGCTGGAGAAAAACTACAGAATCCACTGTTCGATCCATAACGCTATAATACC
AGAGGATTTCAGCATAGCAGATAAAATACAGCAAGTCCTAACCAACACAGGCTTTAGTGACAAACGGGCCCGTTCCATGG
ACATAGATGACTTCATTAGATTGCTACATGGATTCAATGCCGAAGGCATCCATTTTTCTTAG
ORF - retro_etel_34 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
100. % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | VVACELDPRLVAELHKRVQGTPMASKLQVLVGDVLKADLPFFDACVANLPYQISSPFVFKLLLHRPFFRC |
| VVACELDPRLVAELHKRVQGTPMASKLQVLVGDVLKADLPFFDACVANLPYQISSPFVFKLLLHRPFFRC |
Retrocopy | VVACELDPRLVAELHKRVQGTPMASKLQVLVGDVLKADLPFFDACVANLPYQISSPFVFKLLLHRPFFRC |
|
Parental | AILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINF |
| AILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINF |
Retrocopy | AILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINF |
|
Parental | QEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSIHNAIIPEDFSIADKIQQVLTNTGFSDKRA |
| QEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSIHNAIIPEDFSIADKIQQVLTNTGFSDKRA |
Retrocopy | QEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSIHNAIIPEDFSIADKIQQVLTNTGFSDKRA |
|
Parental | RSMDIDDFIRLLHGFNAEGIHFS |
| RSMDIDDFIRLLHGFNAEGIHFS |
Retrocopy | RSMDIDDFIRLLHGFNAEGIHFS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_34 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.