RetrogeneDB ID:

retro_etel_342

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_5672:377..692(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL36
Ensembl ID:ENSETEG00000012943
Aliases:None
Description:ribosomal protein L36 [Source:HGNC Symbol;Acc:13631]


Retrocopy-Parental alignment summary:






>retro_etel_342
ATGGCTGTGCGCTACCCTATGGCCGTGGGCCTCGACAAGGGCCACAAGGTGACCAAGAACGTGAGCAAGCCGAGGCACAG
CCGCCGCCGCGGGCGCCTCGCCAAGCACACCAAGTTCGTGCAGGACATGATCTGGGAGGTGTGTGGCTTCGCACCCTACG
AGCGAAGGGCCATGGAGCTGCTCAAGGTCTCCAAGGACAAGCGGGCACTTAAGTTCATCAAGAAGCGGGTGGGCACACAC
ATCTGGGCTAAGAGGAAGAAAGGGGAGCTAAGCAACGTGCTTGCAGCCATGAGGAAGGCCGCTGCCAAGAAGGAC

ORF - retro_etel_342 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.71 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAVRYPMAVGLDKGHKVTKNVSKPRHSRRRGXXXXXXXXXXXMIREVCGFAPYERRAMELLKVSKDKRAL
MAVRYPMAVGLDKGHKVTKNVSKPRHSRRRG...........MI.EVCGFAPYERRAMELLKVSKDKRAL
RetrocopyMAVRYPMAVGLDKGHKVTKNVSKPRHSRRRGRLAKHTKFVQDMIWEVCGFAPYERRAMELLKVSKDKRAL
ParentalKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD
KFIKKRVGTHI.AKRK..ELSNVLAAMRKAAAKKD
RetrocopyKFIKKRVGTHIWAKRKKGELSNVLAAMRKAAAKKD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_342 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 111 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000123496 retrocopies
Bos taurus ENSBTAG000000017943 retrocopies
Callithrix jacchus ENSCJAG000000170722 retrocopies
Dasypus novemcinctus ENSDNOG000000051638 retrocopies
Echinops telfairi ENSETEG00000012943 15 retrocopies
Felis catus ENSFCAG000000118385 retrocopies
Gorilla gorilla ENSGGOG0000001536511 retrocopies
Latimeria chalumnae ENSLACG000000151611 retrocopy
Macropus eugenii ENSMEUG000000027434 retrocopies
Monodelphis domestica ENSMODG000000012752 retrocopies
Mustela putorius furoENSMPUG000000061666 retrocopies
Mus musculus ENSMUSG000000578639 retrocopies
Otolemur garnettii ENSOGAG0000002704912 retrocopies
Pongo abelii ENSPPYG0000000943112 retrocopies
Rattus norvegicus ENSRNOG000000334735 retrocopies
Sarcophilus harrisii ENSSHAG000000134928 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000205182 retrocopies



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