RetrogeneDB ID: | retro_etel_352 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_5836:150209..150822(+) | ||
Located in intron of: | ENSETEG00000008569 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000009155 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.35 % |
Parental protein coverage: | 81.03 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | EDIFYTSKLWVTFLRPELAQSALEISLKKLQLD-YVDLYLIHYPTALKPGEEMIPEDEHGKVIFDTVDFC |
E..F.T.KLW.T.LRPEL..SALE.SL.KLQL...VDLYLI.....LKPGE...P.DEHGK..F.T...C | |
Retrocopy | EEPFCTCKLWFTALRPELVPSALEKSLQKLQLS<FVDLYLIPWAGPLKPGE-IFPQDEHGKLAFGTEALC |
Parental | ATWEVLEKCKDDGLAKSIGVSNFNHKQLEMILNKPGLKYKPVCNQVECHPYLNQSKLLDFCKSKDIVLIA |
ATWE.L.KCKD..L.KSIG.S.F.HKQL..ILNKPGLKY.PVCNQVECHPY.NQSKLL.FCKSK..V..A | |
Retrocopy | ATWEAL*KCKDVRLTKSIGESSFSHKQLKIILNKPGLKYEPVCNQVECHPYINQSKLLGFCKSKETVWVA |
Parental | YGALGTQRDK-CVDQSSPVLLNDPVLGALAKKY-NQSPALIALRYQIQRGVVVLAMSFTEREIKENIQ |
YG.LGTQR.K.CV.QSSPVLL.DPVLG.LAKKY....PA..ALRY.I.RG.V.LA.S..E....E..Q | |
Retrocopy | YGVLGTQR*KLCVAQSSPVLLDDPVLGTLAKKY<RKNPAQVALRY*IHRGIVDLAKSHSEPRLEEHTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008668 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006005 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000006450 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009155 | 1 retrocopy |
retro_etel_352 ,
|
Rattus norvegicus | ENSRNOG00000038361 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006005 | 1 retrocopy |