RetrogeneDB ID: | retro_etel_359 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_5952:59481..59915(+) | ||
Located in intron of: | ENSETEG00000015038 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSETEG00000004095 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 62.67 % |
Parental protein coverage: | 56.15 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LDREGQSRAKVLSNMIKQKRKEKAGKWEV-PLPKVRAQGETEVLKVIRTGK-RKKKAWKRMVT-KVCFVG |
.DR.GQ..AKVLSN.IKQKRK.K.GKWEV.PLPKV.A.G....LKVI...K..KK...........CFVG | |
Retrocopy | MDRGGQFQAKVLSNRIKQKRKGKVGKWEV<PLPKVHAGGNGSILKVIQAEKRKKKACKRTVTK<SLCFVG |
Parental | DGFTRKPPKYERFIXXXGLRF-KKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSE |
DGFT.KP.K.E.FI...G..F.KKAHVTHPEL.....LP.L..K.N..SPLYTT..VITKGTV.EV.VSE | |
Retrocopy | DGFTQKPLKSE*FIAPVGVMF>KKAHVTHPEL-SQLLLPVLDAK-NLLSPLYTTWSVITKGTVTEVDVSE |
Parental | LGLVTQGGKV |
LGLV.QGGKV | |
Retrocopy | LGLVIQGGKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |