RetrogeneDB ID: | retro_etel_392 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_6690:12360..13111(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSETEG00000007508 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 90.51 % |
Parental protein coverage: | 75.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MATLKEQLIQNLLKEEQAPQNKITVVGVGAV-GMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGS |
MATLKEQLIQNLLK.EQ.PQNKITVVG.GAV.GMACAI.ILMKDLADELAL.DV.EDKLKGEMMDLQHGS | |
Retrocopy | MATLKEQLIQNLLKAEQTPQNKITVVGMGAV<GMACAIRILMKDLADELALADVVEDKLKGEMMDLQHGS |
Parental | LFLRTPKIVSGKDYDVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNP |
LFLRTPKI.SGKDY...ANSKLV.ITAGARQQEGESRLNLV.RNVNIFKFIIPNVVK..PNCKLL.VSNP | |
Retrocopy | LFLRTPKIISGKDYNGAANSKLVFITAGARQQEGESRLNLVPRNVNIFKFIIPNVVKHNPNCKLLSVSNP |
Parental | VDILTYVAWKISGFPKNRVIGSGCNLDSARF-RYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAG |
VDILT.VAWKISGFPKNRVIGSGC.LDSA.F..YLMGERLGVHPLSCHGW.LGEHGDSSVPVWSGVNVAG | |
Retrocopy | VDILTDVAWKISGFPKNRVIGSGCDLDSAWF<PYLMGERLGVHPLSCHGWILGEHGDSSVPVWSGVNVAG |
Parental | VSLKNLHPALGTDGDKEQWKEVHKQVVESAYEVIKLKGYTSWA |
VSLKNLHPALGTDG.KEQWKEVHKQVVESAYEVIK.KGYTSWA | |
Retrocopy | VSLKNLHPALGTDGAKEQWKEVHKQVVESAYEVIKMKGYTSWA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |